PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_A83084AC1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 316aa    MW: 34555.7 Da    PI: 9.0083
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_A83084AC1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.93.2e-3140144199
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae++     +++ ++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +
  Traes_4DL_A83084AC1.1  40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldASSTDKGLLLSFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGR 127
                            89***************************966777899*************************************************6 PP

                            -.SS.SEE..EEEEE-S CS
                     B3  85 d.gr.sefelvvkvfrk 99 
                              g+  +++l++ ++r+
  Traes_4DL_A83084AC1.1 128 GvGEaARGRLFIDWRRR 144
                            658889999**999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4029144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-2937142IPR015300DNA-binding pseudobarrel domain
CDDcd100174.82E-2638125No hitNo description
SMARTSM010198.5E-2240145IPR003340B3 DNA binding domain
PfamPF023622.8E-2840144IPR003340B3 DNA binding domain
PROSITE profilePS5086314.21240145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEFTAIRPST AAAGGCSSPP PADHKAEEEA AGAVEKEHMF DKVVTPSDVG KLNRLVIPKQ  60
HAEKYFPLDA SSTDKGLLLS FEDRAGKPWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLDAG  120
DTVSFGRGVG EAARGRLFID WRRRPDVVLP PGHHRGFALP SVPFSPWMAH PAGPGGAGGR  180
MFLQATTPAT VYDYDAYQHH HQRRHIGYDG YGAAPGRQVL FYQPQQHYHH QHQSLVLESV  240
PVRMVAAPEH PEASAVATSG SKRVRLFGVN LECAADAEED FSGPGRTATT ALQLLSPASS  300
SSSSSGKARC SLNLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-453714411117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666010.0AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985935.11e-125PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotQ8LMR91e-117Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLW5EKI10.0W5EKI1_WHEAT; Uncharacterized protein
STRINGSi036864m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-68B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]